Author

John M. Cunningham

University of ChicagoORCID 0000-0002-6335-5998Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Ivan P. G. MoskowitziD· 2 shared Megan RowtoniD· 2 shared Zhezhen WangiD· 2 shared Andrew Daniel HoffmanniD· 1 shared Andrew Goldstein· 1 shared Brian L. BlackiD· 1 shared Chul KimiD· 1 shared Dannie Griggs· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersDevelopmental Biology

Ivan P. G. MoskowitzORCID

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2 papers

Recent·Most cited

Developmental BiologyCell ReportsPeer-reviewedJun 1, 2023

ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment

Jeffrey D. Steimle, Chul Kim, Megan Rowton…·Kohta Ikegami

This paper identifies sequential phases of ETV2-dependent gene expression that drive hematoendothelial fate commitment from mesoderm progenitors.

14 citations

𝕏 PostBluesky

Systems BiologybioRxivPreprintJun 26, 2021

Tipping-point analysis uncovers critical transition signals from gene expression profiles

Xinan Holly Yang, Zhezhen Wang, Andrew Goldstein…·John M. Cunningham

The paper introduces BioTIP, a method to identify critical transition signals in gene expression data, showing it accurately detects bifurcations and identifies key transcription factors involved in differentiation.

2 citations

𝕏 PostBluesky