Author

Sophie L. Farrow

University of AucklandORCID 0000-0002-6578-4219Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetic & Genomic Medicine· 2 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:GWAS summary statistics· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Justin Martin O'SullivaniD· 4 shared Antony A. CooperiD· 3 shared William S. SchierdingiD· 3 shared Daniel HoiD· 2 shared Denis M. NyagaiD· 2 shared Evgeniia GolovinaiD· 2 shared Sreemol GokuladhasiD· 2 shared Tayaza FadasoniD· 2 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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4 shared papersGenetic & Genomic Medicine

Justin Martin O'SullivanORCID

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4 papers

Recent·Most cited

Genetic & Genomic MedicinemedRxivPreprintJun 13, 2024

Benchmarking and quality control for nanopore sequencing and feasibility of rapid genomics in New Zealand: validation phase at a single quaternary hospital

Denis M. Nyaga, Peter Tsai, Clare Gebbie…·Justin Martin O'Sullivan

The paper benchmarks nanopore sequencing performance and validates a rapid genomics pipeline for clinical use in New Zealand.

DOI 10.1101/2024.06.13.24307636

humanwhole-genome sequencing

𝕏 PostBluesky

GeneticsBrainPeer-reviewedJan 25, 2022

Establishing gene regulatory networks from Parkinson's disease risk loci

Sophie L. Farrow, William S. Schierding, Sreemol Gokuladhas…·Justin Martin O'Sullivan

This study identifies gene regulatory networks influenced by Parkinson's disease risk SNPs using eQTL and chromosomal conformation data across multiple tissues.

27 citations

humanDNA methylation

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Genetic & Genomic MedicineFrontiers in GeneticsPeer-reviewedJan 3, 2022

Machine learning identifies six genetic variants and alterations in the Heart Atrial Appendage as key contributors to PD risk predictivity.

Daniel Ho, William S. Schierding, Sophie L. Farrow…·Justin Martin O'Sullivan

The paper uses machine learning to identify six genetic variants and tissue-specific eQTL effects linked to Parkinson's disease risk.

12 citations

humanGWAS summary statistics

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GenomicsbioRxivPreprintApr 14, 2020

A transcription regulatory network within the ACE2 locus may promote a pro-viral environment for SARS-CoV-2 by modulating expression of host factors.

Tayaza Fadason, Sreemol Gokuladhas, Evgeniia Golovina…·Justin Martin O'Sullivan

The paper identifies regulatory elements within the ACE2 locus that control host gene expression, suggesting they may contribute to a pro-viral environment for SARS-CoV-2.

16 citations

humanbulk RNA-seq

𝕏 PostBluesky