Markus Johannes Ankenbrand

FA-NIVA provides an automated analysis framework for Nanopore long-read sequencing data to detect SNVs and SVs in Fanconi anemia genes with improved genotyping accuracy.

This study introduces mudRapp-seq to visualize influenza A viral RNA transcription and replication at the single-cell level, revealing early mRNA expression and differential segment expression.

The paper investigates the genomic capabilities of bacteria in grapevine crown galls, finding that opine utilization genes are widespread among both virulent and non-virulent strains, supporting coexistence and community shaping.

The paper introduces permGWAS, a permutation-based GWAS method that improves significance thresholds for skewed phenotypes and reduces false discovery rates compared to Bonferroni correction.

The paper benchmarks seven chloroplast genome assembly tools, finding significant performance differences and assembling 20 novel chloroplast genomes from 105 datasets.

GWAS-Flow is a GPU-accelerated framework for efficient permutation-based GWAS, outperforming custom scripts in speed without loss of accuracy.