Author

Deepak Kumar Jha

Boston Children's HospitalORCID 0000-0002-6657-5662Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Deepak Kumar Jha2 papers · BRIC-National Agri-Food and Biomanufacturing Institute

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:proteomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Alejandro Vázquez-Otero· 1 shared Allison Tompkins· 1 shared Anup VaidyaiD· 1 shared Arianna MarkeliD· 1 shared Benoît LaurentiD· 1 shared Bjoern ChapuyiD· 1 shared Caroline KubaczkaiD· 1 shared Cheng ZhangiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alejandro Vázquez-Otero

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2 papers

Recent·Most cited

BioinformaticsInternational Journal of Molecular SciencesPeer-reviewedJan 23, 2026

InCytokine, an open-source software, reveals a TREM2 variant specific cytokine signature

Deepak Kumar Jha, Marco Ancona, Filip Oplt…·Danny A. Bitton

InCytokine is an open-source tool for analyzing cytokine and chemokine data from protein arrays, revealing genotype-specific signatures in TREM2 variants.

DOI 10.3390/ijms27031137

humanproteomics

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GenomicsbioRxivPreprintJan 31, 2025

Heterochromatin fidelity is a therapeutic vulnerability in lymphoma and other human cancers

Mohamad Ali Toufic Najia, Deepak Kumar Jha, Cheng Zhang…·George Q. Daley

The paper identifies KDM4 demethylase inhibition as a therapeutic strategy for lymphoma and other cancers by rewiring heterochromatin and inducing DNA damage.

1 citation

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