Author

Pallav Kosuri

Salk Institute for Biological StudiesORCID 0000-0002-7025-3543Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:spatial transcriptomics· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Annabelle M. ColesiD· 2 shared Yuening LiuiD· 2 shared Amanda L. WackeriD· 1 shared Ana VujićiD· 1 shared Arlo SheridaniD· 1 shared Boyu LiuiD· 1 shared Brian TenneriD· 1 shared Deevanshu GoyaliD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Annabelle M. ColesORCID

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3 papers

Recent·Most cited

BiophysicsCell Reports MethodsPeer-reviewedAug 13, 2026

Dye-cycling DNA origami rotors for long-term tracking of transcription at base-pair resolution

Amanda L. Wacker, Ryan J. Fantasia, Brian Tenner…·Pallav Kosuri

This paper introduces dcORBIT, a method that extends DNA rotation tracking during transcription to over 10 minutes at 20 Hz with single base-pair precision.

DOI 10.1016/j.crmeth.2026.101550

E. colifluorescence / live-cell microscopy

𝕏 PostBluesky

GenomicsbioRxivPreprintMay 8, 2026

Spatial imprints of emergent cardiomyocyte states in the pressure-overloaded heart

Yuening Liu, Annabelle M. Coles, Jonah Castiglione…·Pallav Kosuri

The paper uses spatial transcriptomics to analyze cardiomyocyte states in pressure-overloaded mouse hearts, finding pro-fibrotic states linked to microenvironmental changes.

DOI 10.64898/2026.05.04.721738

mousespatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 7, 2025

BellaVista: Open-Source Visualization for Imaging-Based Spatial Transcriptomics

Annabelle M. Coles, Yuening Liu, Pallav Kosuri

BellaVista provides an open-source tool for visualizing and analyzing imaging-based spatial transcriptomics data, supporting multiple platforms and enabling interactive exploration.

DOI 10.1101/2025.01.07.631783

spatial transcriptomicsexperimental assay

𝕏 PostBluesky