Alexander Tonevitsky

Viral and host small RNA transcriptome analysis of SARS-CoV-1 and SARS-CoV-2-infected human cells reveals novel viral short RNAs.

The paper analyzes small RNA-seq data from SARS-CoV-1 and SARS-CoV-2 infected cells to identify novel viral short RNAs and their potential roles in infection.

Differential co-expression network analysis with DCoNA reveals isomiR targeting aberrations in prostate cancer

DCoNA identifies differential co-expression networks in prostate cancer, revealing isomiR targeting aberrations and a cancer-specific role for hsa-miR-93-5p.

ExhauFS: exhaustive search-based feature selection for classification and survival regression

ExhauFS performs exhaustive feature selection for classification and survival regression, demonstrating its utility on cancer datasets.

T-CoV: a comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutations

T-CoV analyzes how SARS-CoV-2 mutations affect HLA-peptide interactions to predict variant-specific immune evasion.

Association of HLA class I genotypes with age at death of COVID-19 patients

The paper investigates the association between HLA class I genotypes and age at death in COVID-19 patients, finding specific alleles linked to increased or decreased risk of early mortality.

The potential role of miR-21-3p in coronavirus-host interplay

The paper identifies miR-21-3p as a key miRNA potentially involved in coronavirus-host interactions through computational prediction and analysis of miRNA sequencing data.

Endocrine signaling mediates asymmetric motor deficits after unilateral brain injury

This study shows that unilateral brain injury in rats causes motor asymmetry and gene expression changes in the spinal cord, mediated by neurohormonal signaling from the injured brain.

Dissection of demethylation and toxicity induced gene expression changes after decitabine treatment.

This study examines how decitabine affects DNA methylation and gene expression in cancer cells, revealing dose-dependent demethylation and toxicity effects on gene regulation.