Marcus Rosenblatt

The paper designs a biohybrid materials circuit with binary decoder functionality using protease-based modules to detect small molecules and produce regulated protease outputs.

The paper investigates how Pou5f3 and Nanog regulate enhancer types during zygotic genome activation through an activator-blocker mechanism.

This paper introduces a regularization method for identifying cell-type specific mechanisms in dynamical models, demonstrating its effectiveness with synthetic and biological data.

BlotIt aligns relative experimental measurements from Western blot and qPCR by estimating scaling factors and providing confidence intervals for comparable data analysis.

The paper shows Pou5f3 and Sox19b independently regulate enhancer chromatin accessibility, affecting zygotic gene expression in zebrafish embryos.

This paper introduces the R package dMod for dynamic modeling, parameter estimation, and uncertainty analysis in complex systems.