Author

Violeta Castelo-Szekely

University of LausanneORCID 0000-0002-7390-0355Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Organism:mouse· 2 Assay:Ribo-seq· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

David GatfieldiD· 2 shared Alaaddin Bulak ArpatiD· 1 shared Claire BertelliiD· 1 shared Farid ChaabaneiD· 1 shared Gilbert GreubiD· 1 shared Jernej UleiD· 1 shared Mara De Matos· 1 shared Marina TusupiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersGenomics

David GatfieldORCID

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3 papers

Recent·Most cited

BioinformaticsBioinformatics AdvancesPeer-reviewedDec 26, 2024

zAMP and zAMPExplorer: Reproducible Scalable Amplicon-based Metagenomics Analysis and Visualization

Valentin Scherz, Sedreh Nassirnia, Farid Chaabane…·Claire Bertelli

7 citations

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsNucleic Acids ResearchPeer-reviewedApr 8, 2019

Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock

Violeta Castelo-Szekely, Mara De Matos, Marina Tusup…·David Gatfield

The paper identifies DENR-dependent translation reinitiation events and links uORF usage to circadian clock regulation by analyzing ribosome profiling data in DENR-deficient cells.

38 citations

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GenomicsGenome biologyPeer-reviewedJun 16, 2017

Translational contributions to tissue-specificity in rhythmic and constitutive gene expression.

Violeta Castelo-Szekely, Alaaddin Bulak Arpat, Peggy Janich, David Gatfield

The paper investigates how translation efficiency contributes to tissue-specific rhythmic and constitutive gene expression in kidney and liver, revealing translational control mechanisms and compensation effects.

60 citationstop 5%

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