Claire Bertelli

The paper examines microbial community differences in snake cloaca with and without Chlamydiota, finding subtle compositional and functional shifts associated with infection.

This study compares cloacal microbiota between venomous and non-venomous snakes, finding higher bacterial richness and distinct community structures in non-venomous species.

The paper analyzes antimicrobial resistance gene mobility across 8000 bacterial species, finding that certain resistance mechanisms are more associated with mobile elements than others.

This study evaluates phage community preservation during FMT production and engraftment in patients with rCDI, finding donor phages persist in recipients.

zDB integrates genome analysis and visualization tools to simplify comparative genomics by automating orthology prediction, phylogenetic inference, and metabolic pathway comparison across multiple genomes.

This study shows that continuous in vivo reprogramming with OSKM causes hepatic and intestinal failure, leading to premature death, but a new mouse strain reduces these effects.

This study provides guidelines for accurate SARS-CoV-2 genotyping using amplicon-based sequencing, showing that at least 1000 viral genomes are needed to reliably detect variants at 10% frequency.

A decentralized open-source web platform lets public health labs run outbreak sequencing pipelines on local compute, keeping data under their own governance while still exchanging results between instances.

The paper reports the discovery of a CRISPR system in Protochlamydia naegleriophila KNic and traces its evolutionary acquisition within the Chlamydiales order.