Gilbert Greub

Functional insights into nucleoside diphosphate kinases encoded by two ndk paralogs in Waddlia chondrophila

This study investigates the functional roles of two Ndk paralogs in W. chondrophila, suggesting distinct subcellular localizations and potential involvement in host interaction and nucleotide metabolism.

Adaptation of Pseudomonas aeruginosa to the lung allograft environment in cystic fibrosis lung transplant recipients

This study investigates how Pseudomonas aeruginosa adapts to the non-CF lung allograft environment in cystic fibrosis transplant recipients, finding mutations linked to lifestyle changes and persistence from sinus seeding.

Microbial community profiles of the snake cloaca in the presence and absence of Chlamydiota

The paper examines microbial community differences in snake cloaca with and without Chlamydiota, finding subtle compositional and functional shifts associated with infection.

Comparative analysis of cloacal microbiota in Henophidia (non-venomous) and Caenophidia (venomous) snakes

This study compares cloacal microbiota between venomous and non-venomous snakes, finding higher bacterial richness and distinct community structures in non-venomous species.

Nanomotion technology for testing azithromycin susceptibility of Salmonella enterica

This study uses nanomotion technology to rapidly test Salmonella enterica's susceptibility to azithromycin, showing correlation with traditional susceptibility measures.

zAMP and zAMPExplorer: Reproducible Scalable Amplicon-based Metagenomics Analysis and Visualization

Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples

This study provides guidelines for accurate SARS-CoV-2 genotyping using amplicon-based sequencing, showing that at least 1000 viral genomes are needed to reliably detect variants at 10% frequency.

CRISPR system acquisition and evolution of an obligate intracellular Chlamydia-related bacterium

The paper reports the discovery of a CRISPR system in Protochlamydia naegleriophila KNic and traces its evolutionary acquisition within the Chlamydiales order.