Author

Katharina Zirngibl

Heidelberg UniversityORCID 0000-0002-7518-0339Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Ana Martín-VillalbaiD· 1 shared Andrés Sanz-MorejóniD· 1 shared Ania RutkowskaiD· 1 shared Aylin Korkmaz· 1 shared Bianka Baying· 1 shared Christophe LancriniD· 1 shared Giovanna BergaminiiD· 1 shared H. Christian EberliD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperNeuroscience

Ana Martín-VillalbaORCID

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Author profile →

3 papers

Recent·Most cited

NeurosciencebioRxivPreprintSep 30, 2026

Joint recording of past and present transcriptomes reconstructs single-cell trajectories

Zeynep AYDIN, Svetlana Ovchinnikova, Iris A. Unterweger…·Laure Bally‐Cuif

This paper introduces scReMeMber-Seq, a method to reconstruct single-cell trajectories by linking past and present transcriptomes using methylation-based memory recording.

DOI 10.64898/2026.09.28.755048

mousezebrafish

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Systems BiologybioRxivPreprintAug 15, 2023

Integration of Thermal Proteome Profiling with phosphoproteomic and transcriptomic data via mechanistic network models decodes the molecular response to PARP inhibition

Mira Lea Burtscher, Stephan Gade, Martín Garrido‐Rodríguez…·Julio Sáez-Rodríguez

The paper integrates Thermal Proteome Profiling with phosphoproteomic and transcriptomic data using network models to uncover molecular responses to PARP inhibition in ovarian cancer.

DOI 10.1101/2023.08.15.553354

humanproteomics

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Developmental BiologyNature CommunicationsPeer-reviewedJan 29, 2020

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

Morgan Oatley, Özge Vargel Bölükbaşı, Valentine Svensson…·Christophe Lancrin

The paper identifies CD44 as a marker and regulator of haematopoietic stem cell development through single-cell transcriptomics and functional experiments.

102 citationstop 1%

mousescRNA-seq

𝕏 PostBluesky