Laure Bally‐Cuif

This paper introduces scReMeMber-Seq, a method to reconstruct single-cell trajectories by linking past and present transcriptomes using methylation-based memory recording.

EpiCure is a tool for curating epithelial segmentation errors in 2D movies, improving accuracy and efficiency in single-cell dynamics analysis.

This study links transcriptomic data with real-time cell behavior to uncover molecular fate asymmetry and a quiescence cycle in adult neural stem cells.

This study shows mTORC1 supports quiescent NSCs in acquiring activation competence, challenging its role as solely a proliferation regulator.

The paper measures Notch3 signaling in zebrafish adult neural stem cells and shows it correlates with quiescence and stemness, with jagged1b promoting stemness through lateral induction.

FishFeats provides a streamlined pipeline for quantifying multimodal labeling in 3D tissues, integrating image analysis steps into a user-friendly tool for non-computational users.

The paper identifies molecular clusters of quiescent neural stem cells in zebrafish and shows how Notch signaling inhibition leads to distinct activation behaviors.

This study identifies Prosaposin as a regulator of neural stem cell quiescence in zebrafish, showing it maintains deep quiescence and reduces activation.

The paper links apical size and deltaA expression to neural stem cell activation and division modes in zebrafish, showing their independence from Notch signaling.

The paper uses zebrafish single-cell transcriptomics to study macroglia evolution and adult neurogenesis, identifying conserved features and functional origins of astrocytes and radial glia-like cells.

The paper introduces LocalZProjector and DeProj, tools for accurate 2D projection and morphometric analysis of 3D microscopy images, showing they handle complex data and correct projection distortions.

The paper shows neural stem cells use local feedback mechanisms with delays to coordinate their division and maintain homeostasis in the adult brain.

The paper investigates the dynamics of adult neural stem cells in zebrafish, showing a hierarchical organization with reservoir and operational stem cells and an upstream progenitor population supporting long-term neurogenesis.

The paper shows that in juvenile killifish, accelerated brain growth is driven by a second type of progenitors rather than increased radial glia activity.

The paper shows that Retinoic Acid signaling, specifically through Rere, controls brain asymmetry and handedness in zebrafish and mouse.