Author

Giovanna Bergamini

GlaxoSmithKline (Germany)ORCID 0000-0002-9662-9502Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ania RutkowskaiD· 1 shared Christian TischeriD· 1 shared Dmytro DvornikoviD· 1 shared Frank WippichiD· 1 shared H. Christian EberliD· 1 shared Julio Sáez-RodrígueziD· 1 shared Katharina ZirngibliD· 1 shared Luís A. Vale-SilvaiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperSystems Biology

Ania RutkowskaORCID

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2 papers

Recent·Most cited

iss-nf: A Nextflow-based end-to-end in situ sequencing decoding workflow

Nima Vakili, Sebastián González-Tirado, Nils Kurzawa, Dmytro Dvornikov, Zeinab Mokhtari, Frank Wippich, Giovanna Bergamini, Rainer Pepperkok, Christian Tischer, Luís A. Vale-Silva

The paper introduces iss-nf, a Nextflow-based workflow for analyzing in situ sequencing data, demonstrating its effectiveness on multiple datasets.

bioRxiv · Oct 16, 2025 · PreprintBioinformatics

Integration of Thermal Proteome Profiling with phosphoproteomic and transcriptomic data via mechanistic network models decodes the molecular response to PARP inhibition

Mira Lea Burtscher, Stephan Gade, Martín Garrido‐Rodríguez, Ania Rutkowska, Thilo Werner, H. Christian Eberl, Massimo Petretich, Natascha Knopf, Katharina Zirngibl, Paola Grandi, Giovanna Bergamini, Marcus Bantscheff, Maria Faelth-Savitski, Julio Sáez-Rodríguez

The paper integrates Thermal Proteome Profiling with phosphoproteomic and transcriptomic data using network models to uncover molecular responses to PARP inhibition in ovarian cancer.

bioRxiv · Aug 15, 2023 · PreprintSystems Biology