Author

Ningxuan Zhou

Harvard UniversityORCID 0000-0002-7623-2276Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Henry W. LongiD· 2 shared Myles A BrowniD· 2 shared Paloma CejasiD· 2 shared Xintao QiuiD· 2 shared Yingtian XieiD· 2 shared Alexander ZhuiD· 1 shared Allen W. LynchiD· 1 shared Ariel FeigliniD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Henry W. LongORCID

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2 papers

Recent·Most cited

scATAnno: Automated Cell Type Annotation for single-cell ATAC Sequencing Data

Yija Jiang, Zhirui Hu, Feng Lu, Allen W. Lynch, Junchen Jiang, Alexander Zhu, Ziqi Zeng, Yi Zhang, Gongwei Wu, Yingtian Xie, Rong Li, Ningxuan Zhou, Clifford A. Meyer, Paloma Cejas, Myles A Brown, , Xintao Qiu

scATAnno automatically annotates scATAC-seq data using reference atlases, outperforming existing methods across multiple datasets.

Genomics Proteomics & Bioinformatics · Nov 24, 2025Peer-reviewedBioinformatics

CoBRA: Containerized Bioinformatics workflow for Reproducible ChIP/ATAC-seq Analysis - from differential peak calling to pathway analysis

Xintao Qiu, Avery S. Feit, Ariel Feiglin, Yingtian Xie, Nikolas Kesten, Len Taing, Joseph Perkins, Shengqing Stan Gu, Yihao Li, Paloma Cejas, Ningxuan Zhou, Rinath M. Jeselsohn, Myles A Brown, X. Shirley Liu, Henry W. Long

CoBRA provides a reproducible pipeline for ChIP/ATAC-seq analysis, including peak calling, clustering, and pathway analysis, with code available at the given URL.

Genomics Proteomics & Bioinformatics · Jul 18, 2021Peer-reviewedBioinformatics