Author

Dimitri Boeckaerts

Ghent UniversityORCID 0000-0002-7668-2840Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1

Frequent Co-Authors

Yves BriersiD· 2 shared Agnieszka ŁątkaiD· 1 shared Ana Rita CostaiD· 1 shared Anna MantzouratouiD· 1 shared Bernard De Baets CiD· 1 shared Claire King· 1 shared Daniela Rothschild-RodrigueziD· 1 shared Elizabeth A. S. SheridaniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersMicrobiology

Yves BriersORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

KlebPhaCol: A community-driven resource for Klebsiella research identified a novel gut phage order associated with the human gut

Daniela Rothschild-Rodriguez, Kai S Lambon, Simran Krishnakant Kushwaha, Sofya K. Garushyants, Moritz Ertelt, Agnieszka Łątka, Ana Rita Costa, Anna Mantzouratou, Claire King, Dimitri Boeckaerts, Elizabeth A. S. Sheridan, Eugene V. Koonin, Francesca Merrick, Francis A. Drobniewski, Ilaria De Angelis, , Franklin L. Nóbrega

The paper introduces KlebPhaCol, a resource containing 53 phages and 74 Klebsiella isolates, including a novel gut phage order, to advance understanding of Klebsiella-phage interactions.

Nucleic Acids Research · Nov 13, 2025Peer-reviewedMicrobiology

DepoScope: accurate phage depolymerase annotation and domain delineation using large language models

Robby Concha-Eloko, Michiel Stock, Bernard De Baets C, Yves Briers, Rafael Sanjuán, Pilar Domingo‐Calap, Dimitri Boeckaerts

DepoScope uses large language models to accurately annotate phage depolymerases and their domains, improving detection through sequence and amino-acid level predictions.

PLoS Computational Biology · Aug 5, 2024Peer-reviewedBioinformatics