Michiel Stock

PhaLP 2.0 enhances a phage lysin database by integrating metagenomic data and introducing SUBLYME, a machine learning tool that identifies and classifies lysins with high accuracy.

DepoScope uses large language models to accurately annotate phage depolymerases and their domains, improving detection through sequence and amino-acid level predictions.

The paper introduces algebraic shortcuts for leave-one-out cross-validation to evaluate kernel-based network inference methods efficiently.