Author

Xuerui Yang

Tsinghua UniversityORCID 0000-0002-7731-2147Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Andras Attila HeczeyiD· 1 shared Chih-Hung Hsieh· 1 shared Chung-Te ChangiD· 1 shared David B. FlintiD· 1 shared Ektaben Patel· 1 shared Eric James de Bony de Lavergne· 1 shared Gabriel Oliveira SawakuchiiD· 1 shared Haiteng DengiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Andras Attila HeczeyORCID

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2 papers

Recent·Most cited

Coordinated regulation by lncRNAs results in tight lncRNA-target couplings

Hua‐Sheng Chiu, Sonal Somvanshi, Chung-Te Chang, Eric James de Bony de Lavergne, Zhaowen Wei, Chih-Hung Hsieh, Wim Trypsteen, Kathleen A. Scorsone, Ektaben Patel, Tien T. Tang, David B. Flint, Mohammad Javad Najaf Panah, Hyunjae Ryan Kim, Purva Rathi, Yan‐Hwa Wu Lee, , Pavel Sumazin

The paper identifies lncRNAs that coordinately regulate both transcription and post-transcriptional processing of their targets, showing tight coupling between lncRNA and target abundance, with implications for cancer gene regulation.

Cell Genomics · Jul 7, 2025Peer-reviewedBioinformatics

De Novo Annotation And Characterization Of The Translatome With Ribosome Profiling Data

Zhengtao Xiao, Rongyao Huang, Xudong Xing, Yuling Chen, Haiteng Deng, Xuerui Yang

This paper introduces RiboCode, a method for de novo translatome annotation using ribosome profiling data, showing improved efficiency, sensitivity, and accuracy in identifying novel ORFs across different yeast stress conditions.

Nucleic Acids Research · Feb 28, 2018Peer-reviewedBioinformatics