Hongning Zhang

scPert predicts single-cell transcriptomic responses to genetic perturbations by integrating large language model embeddings and biological knowledge, improving accuracy in both single-gene and combinatorial perturbations.

IE-MOIF improves multi-omics data integration by enhancing information and using attention mechanisms, leading to better biomarker discovery and classification.

AnnoPRO improves protein function annotation by using image-like representations and multimodal deep learning, showing better performance for rare protein families.