Author

Rémi Planel

Institut PasteurORCID 0000-0002-7826-3316Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Assay:proteomics· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Aude G. BernheimiD· 2 shared Florian TessoniD· 2 shared Jean CuryiD· 2 shared Adelme BaziniD· 1 shared Alexandra CalteauiD· 1 shared Amandine PerriniD· 1 shared Artyom A. EgoroviD· 1 shared Bertrand NéroniD· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Aude G. BernheimORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyNucleic Acids ResearchPeer-reviewedDec 6, 2024

Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements

Florian Tesson, Erin D. Huiting, Linlin Wei…·Aude G. Bernheim

The paper develops AntiDefenseFinder to detect anti-defense systems in prokaryotes, phages, and MGEs, identifying 47,981 systems and revealing their distribution and evolutionary dynamics.

85 citationstop 1%

bacteria (other)virus

𝕏 PostBluesky

GenomicsPeer Community JournalPeer-reviewedSep 25, 2024

A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases.

Florian Tesson, Rémi Planel, Artyom A. Egorov…·Jean Cury

The paper introduces DefenseFinder, a resource for antiphage defense systems, including a web service, wiki, and databases with structure predictions.

120 citationstop 1%

proteomicsDNA methylation

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedMar 19, 2020

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

Guillaume Gautreau, Adelme Bazin, Mathieu Gachet…·David Vallenet

PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.

282 citationstop 1%

whole-genome sequencingstatistical model

𝕏 PostBluesky