Author

Ryan M. Allen

Vanderbilt University Medical CenterORCID 0000-0002-8057-3436Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Danielle L. MichelliD· 2 shared Kasey C. VickersiD· 2 shared MacRae F. LintoniD· 2 shared Quanhu ShengiD· 2 shared Wanying ZhuiD· 2 shared Ahsan HameediD· 1 shared Anca Ifrim· 1 shared Andrew J. MorrisiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersMolecular Biology

Danielle L. MichellORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJan 12, 2026

Lipolysis of host triacylglyceride-rich lipoproteins creates a toxic microenvironment for Staphylococcus aureus

Trushali Vansadia, Camron N. Collins, Anisha Neupane…·Ryan M. Allen

The paper shows that host-derived triacylglyceride-rich lipoproteins (TRL) can kill Staphylococcus aureus through lipolysis, revealing a potential therapeutic target for chronic infections.

DOI 10.64898/2026.01.12.699058

mousebulk RNA-seq

Molecular BiologyJournal of Biological ChemistryPeer-reviewedApr 18, 2022

Physico-chemical principles of HDL-small RNA binding interactions.

Danielle L. Michell, Ryan M. Allen, Ashley B. Cavnar…·Kasey C. Vickers

The paper investigates how HDL binds to single-stranded small RNAs through interactions with apoA-I, revealing mechanisms that may enable extracellular RNA communication.

8 citations

humanexperimental assay

BioinformaticsJournal of Extracellular VesiclesPeer-reviewedAug 13, 2018

Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins

Ryan M. Allen, Shilin Zhao, Marisol A. Ramirez Solano…·Kasey C. Vickers

The paper introduces TIGER, a pipeline for analyzing extracellular small RNAs, demonstrating its ability to identify sRNAs on lipoproteins and in biofluids with high accuracy.

80 citations

mousebulk RNA-seq