Author

Leena Abdullah

Dartmouth CollegeORCID 0000-0002-8077-7439Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Chinmay Vaidya· 2 shared F. W. KollingiD· 2 shared Margaret E. AckermaniD· 2 shared Yina H. HuangiD· 2 shared Aaron McKennaiD· 1 shared Francesco E. EmilianiiD· 1 shared Hannah Stuart· 1 shared Joshua J. ObariD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Chinmay Vaidya

Mutual co-authors in cluster

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2 papers

Recent·Most cited

RAD: A Read-structure Agnostic Demultiplexer for Single-Cell Long-Read Sequencing and Analysis

Chinmay Vaidya, Margaret C. Carpenter, Leena Abdullah, Fred Kolling, Yina H. Huang, Li Song, Margaret E. Ackerman

RAD is a demultiplexer for single-cell long-read sequencing that improves speed and sensitivity over existing methods while supporting complex read structures.

bioRxiv · Jun 2, 2026 · PreprintBioinformatics

Hierarchal single-cell lineage tracing reveals differential fate commitment of CD8 T-cell clones in response to acute infection.

Leena Abdullah, Francesco E. Emiliani, Chinmay Vaidya, Hannah Stuart, Shawn C. Musial, F. W. Kolling, Joshua J. Obar, Pamela C. Rosato, Margaret E. Ackerman, Song Li, Aaron McKenna, Yina H. Huang

This study uses single-cell lineage tracing to show that CD8 T-cell clones exhibit differential fate commitment during acute infection, with some clones adopting memory or effector biases over time.

Immunity · Feb 27, 2025Peer-reviewedImmunology