Author

Asao Fujiyama

National Institute of GeneticsORCID 0000-0002-8143-9300Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Atsushi ToyodaiD· 3 shared Adam M. PhillippyiD· 1 shared Aoi HosakaiD· 1 shared Atsushi Miyamoto· 1 shared Hidemasa U. BonoiD· 1 shared Hiroko TabunokiiD· 1 shared Hironori WadaiD· 1 shared James C. MullikiniD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersMolecular Biology

Atsushi ToyodaORCID

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3 papers

Recent·Most cited

Identification of a microRNA with a mutation in the loop structure in the silkworm Bombyx mori

M Harada, Midori Tabara, Kazunori Kuriyama, Katsuhiko Ito, Hidemasa U. Bono, Takuma Sakamoto, Miho Nakano, Toshiyuki Fukuhara, Atsushi Toyoda, Asao Fujiyama, Hiroko Tabunoki

The paper identifies a miR-3260 mutation in the loop structure of Bombyx mori and shows it does not affect dicing activity or phenotypic outcomes.

bioRxiv · Mar 27, 2026 · PreprintMolecular Biology

The arms race in noncoding regions of transposable element: the evolution of anti-silencing and RNAi

Taku Sasaki, Kae Kato, Aoi Hosaka, Yu Fu, Atsushi Toyoda, Asao Fujiyama, Yoshiaki Tarutani, Tetsuji Kakutani

The paper shows that RNAi targets noncoding regions of VANDAL TEs, while VANC proteins evolved to escape this silencing, suggesting a co-evolutionary arms race between TEs and host defense mechanisms.

bioRxiv · Dec 19, 2022 · PreprintGenetics

De Novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole genome duplication

Zelin Chen, Yoshihiro Omori, Sergey Koren, Takuya Shirokiya, Takuo Kuroda, Atsushi Miyamoto, Hironori Wada, Asao Fujiyama, Atsushi Toyoda, Suiyuan Zhang, Tyra G. Wolfsberg, Koichi Kawakami, Adam M. Phillippy, NISC Comparative Sequencing Program, James C. Mullikin, Shawn Michael Burgess

This paper presents a high-quality goldfish genome assembly and analyzes gene evolution after whole genome duplication, identifying gene divergence patterns across tissues.

Science Advances · Jun 1, 2019Peer-reviewedGenomics