Author

Yoshihiro Omori

Hiroshima UniversityORCID 0000-0002-1208-1237Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:zebrafish· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:experimental assay· 1

Frequent Co-Authors

Shawn Michael BurgessiD· 2 shared Adam M. PhillippyiD· 1 shared Amaury HerpiniD· 1 shared Asao FujiyamaiD· 1 shared Atsushi Miyamoto· 1 shared Atsushi ToyodaiD· 1 shared Cédric CabauiD· 1 shared Christophe KloppiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Shawn Michael BurgessORCID

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3 papers

Recent·Most cited

Transcriptome-based genome-wide analysis reveals hybridization dynamics and genetic structure of Japanese giant salamanders

Takeshi Igawa, Sumio Okada, Mifuyu Sera, Rika Takagi, Masaki Yamazaki, Zenkichi Shimizu, Hidemasa Bono, Yoshihiro Omori

This study uses transcriptome data to analyze hybridization dynamics and genetic structure in Japanese and Chinese giant salamanders, identifying hybrid groups and genetic contributions.

bioRxiv · May 26, 2026 · PreprintEcology

Sex chromosome and sex locus characterization in the goldfish, Carassius auratus

Ming Wen, Romain Feron, Qiaowei Pan, Justine Guguin, Elodie Jouanno, Amaury Herpin, Christophe Klopp, Cédric Cabau, Margot Zahm, Hugues Parrinello, Laurent Journot, Shawn Michael Burgess, Yoshihiro Omori, John H. Postlethwait, Manfred Schartl, Yann Guiguen

This study characterizes the sex determination system and sex chromosomes in goldfish, identifying a large non-recombining region on linkage group 22 as the likely Y chromosome and developing sex-linked genetic markers.

BMC Genomics · Aug 11, 2020Peer-reviewedGenomics

De Novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole genome duplication

Zelin Chen, Yoshihiro Omori, Sergey Koren, Takuya Shirokiya, Takuo Kuroda, Atsushi Miyamoto, Hironori Wada, Asao Fujiyama, Atsushi Toyoda, Suiyuan Zhang, Tyra G. Wolfsberg, Koichi Kawakami, Adam M. Phillippy, NISC Comparative Sequencing Program, James C. Mullikin, Shawn Michael Burgess

This paper presents a high-quality goldfish genome assembly and analyzes gene evolution after whole genome duplication, identifying gene divergence patterns across tissues.

Science Advances · Jun 1, 2019Peer-reviewedGenomics