Christophe Ambroise

Mosaic selection and gene flow at the onset of grain beetle domestication

The paper investigates gene flow and selection during the domestication of yellow mealworms, finding that adaptive gene flow contributes to adaptation to captivity rather than directly shaping production traits.

metaVaR: introducing metavariant species models for reference-free metagenomic-based population genomics

The paper introduces metaVaR, a reference-free method for metagenomic population genomics using metavariant species models to estimate genomic differentiation and detect natural selection loci.

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.

Investigating Population-scale Allele Specific Expression in Wild Populations of Oithona similis (Cyclopoida, Claus 1866)

The paper investigates population-scale allele-specific expression (psASE) in Oithona similis using metagenomic and metatranscriptomic data, finding that psASE is influenced by population genomic differentiation and linked to natural selection.

Comprehensive analysis of RNA-seq kits for standard, low and ultra-low quantity samples

This study evaluates three RNA-seq library preparation kits for different input quantities and RNA types, showing TruSeq performs best at 100 ng, SMARTer at <1 ng, and SMARTer Ultra-Low for ultra-low inputs.