Author

Jonathan Jeffet

Tel Aviv UniversityORCID 0000-0002-8228-2173Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Yuval EbensteiniD· 3 shared Yael RoichmaniD· 2 shared Amit Shwartz· 1 shared Assaf Grunwald· 1 shared Bernard LereriD· 1 shared Eli FlaxeriD· 1 shared Eyal Katz· 1 shared Gali Umschweif-Nevo· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBioinformatics

Yuval EbensteinORCID

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3 papers

Recent·Most cited

Beyond Bisulfite Sequencing: Resolving 5-hmC with Nanopore Sequencing Unmasks the True-5mC Methylation Entropy Landscape

Uri Bertocchi, Eyal Katz, Jonathan Jeffet, Assaf Grunwald, Neiv Gabay, Jasline Deek, Sujal Verma, Amit Shwartz, Gali Umschweif-Nevo, Bernard Lerer, Yael Roichman, Yuval Ebenstein

The paper compares True-5mC methylation entropy analysis using nanopore sequencing to bisulfite sequencing in kidney cancer and mouse brain, showing bisulfite introduces systematic biases affecting biological interpretation.

bioRxiv · Aug 7, 2026 · PreprintBioinformatics

A Spectral Image Scanning Microscope for Multi-Color High-Resolution Imaging

Lanna Bram, Ofir Tal-Friedman, Neta Fibeesh, Yohai Bar‐Sinai, Eli Flaxer, Yael Roichman, Uri Ashery, Yuval Ebenstein, Jonathan Jeffet

This paper introduces a spectral CSD-ISM system for high-resolution, multi-color imaging with improved speed and resolution.

bioRxiv · May 14, 2025 · PreprintBiophysics

Genome-wide epigenetic profiling of 5-hydroxymethylcytosine by long-read optical mapping

Tslil Gabrieli, Hila Sharim, Gil Nifker, Jonathan Jeffet, Tamar Shahal, Rani Arielly, Michal Levy‐Sakin, Lily Hoch, Nissim Arbib, Yael Michaeli, Yuval Ebenstein

This paper introduces a long-read optical mapping technology to profile 5-hydroxymethylcytosine (5-hmC) across the genome, revealing long-range epigenetic correlations and cell-to-cell variation.

bioRxiv · Feb 5, 2018 · PreprintGenomics