Author

Sina Beier

University of CambridgeORCID 0000-0002-8230-4256Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:experimental assay· 2 Research Focus:database / resource· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aastha Agarwal· 1 shared Adam James ReidiD· 1 shared Anna GórskaiD· 1 shared Benjamin BuchfinkiD· 1 shared Caner BağcıiD· 1 shared Daniel H. HusoniD· 1 shared Dnyanesh DubaliD· 1 shared Emma L. RawlinsiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperDevelopmental Biology

Aastha Agarwal

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Hypoxia promotes airway differentiation in the human lung epithelium

Ziqi Dong, Niek Wit, Aastha Agarwal, Adam James Reid, Dnyanesh Dubal, Sina Beier, Krishnaa T. A. Mahbubani, Kourosh Saeb‐Parsy, Jelle van den Ameele, James A. Nathan, Emma L. Rawlins

This study shows hypoxia promotes airway differentiation in human lung epithelial progenitors through HIF pathways, with implications for lung disease.

Cell stem cell · Oct 11, 2025Peer-reviewedDevelopmental Biology

Panakeia - A universal tool for bacterial pangenome analysis

Sina Beier, Nicholas Robert Thomson

Panakeia provides a detailed and user-friendly analysis of bacterial pangenomes, offering insights into structural patterns and biological diversity.

BMC Genomics · Apr 5, 2022Peer-reviewedBioinformatics

Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data

Krithika Arumugam, Caner Bağcı, Irina N. Bessarab, Sina Beier, Benjamin Buchfink, Anna Górska, Guanglei Qiu, Daniel H. Huson, Rohan B. H. Williams

The paper demonstrates obtaining whole bacterial chromosomes from metagenomic samples using long-read sequencing and presents a pipeline with frame-shift correction.

Microbiome · Apr 16, 2019Peer-reviewedBioinformatics