Adam James Reid

The paper identifies regulators of nuclear-to-cell size ratio and shows nuclear size influences gene expression and cell fate.

This study analyzes histone modifications, chromatin accessibility, and transcription in Schistosoma mansoni gonads to uncover the histone code governing gene expression and reproductive development.

This study shows hypoxia promotes airway differentiation in human lung epithelial progenitors through HIF pathways, with implications for lung disease.

This study shows that reactive oxygen species (ROS) increase in the neonatal cerebellum after injury, and reducing ROS impairs regenerative processes.

The paper identifies FOXO1 as a key regulator of inhibitory neuron differentiation in mouse and human cerebellar progenitors, showing its conservation and regulation by WNT signaling.

The paper manually annotates and characterizes genomic features of long noncoding RNAs in Plasmodium falciparum using long-read RNA sequencing and curated data.

This study identifies daily transcriptomic rhythms in Schistosoma mansoni, revealing rhythmic gene expression patterns and their potential relevance to parasite survival and drug targets.

This paper introduces GDA, a tool for characterising genome architectures, and demonstrates its effectiveness on Apicomplexa parasites and scalability to large genomes.

The paper assembles the chromosomes of Schistosoma mansoni, revealing insights into the evolution of its ZW sex-determination system through gene annotation and synteny analysis.

The paper uses single-cell transcriptomics to map gene usage and developmental trajectories of Plasmodium falciparum during mosquito transmission.

The paper presents genomic and transcriptomic evidence showing Hepatocystis parasites are closely related to Plasmodium but lack blood replication and have lost genes involved in red blood cell invasion.

The paper creates a comprehensive single-cell transcriptome atlas of the Plasmodium berghei life cycle and applies it to define stages in human malaria parasites.

This paper compares genomes of 81 nematode and platyhelminth species to identify gene families related to parasitism and prioritize new drug targets.

This study applies single-cell RNA-sequencing to malaria parasites, revealing transcriptional variation and novel gene expression patterns in sexual stages.