Author

Morgan Shine

Yale UniversityORCID 0000-0002-8307-4210Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Anna Marie PyleiD· 1 shared Chengxin ZhangiD· 1 shared Jing LiniD· 1 shared Karla M. NeugebaueriD· 1 shared Paulina Podszywalow‐BartnickaiD· 1 shared Yang ZhangiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Anna Marie PyleORCID

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2 papers

Recent·Most cited

Molecular BiologyScience AdvancesPeer-reviewedMar 20, 2026

Transcriptional readthrough precedes alternative splicing programs triggered in CML cells by imatinib

Paulina Podszywalow‐Bartnicka, Morgan Shine, Jing Lin, Karla M. Neugebauer

The paper quantifies transcriptional readthrough in CML cells after imatinib treatment and shows it precedes alternative splicing changes and resistance development.

7 citationstop 1%

humanlong-read sequencing

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BioinformaticsNature MethodsPeer-reviewedAug 29, 2022

US-align: Universal Structure Alignments of Proteins, Nucleic Acids, and Macromolecular Complexes

Chengxin Zhang, Morgan Shine, Anna Marie Pyle, Yang Zhang

US-align provides a universal platform for aligning diverse macromolecular structures, improving accuracy and speed in structural comparisons.

510 citationstop 1%

protein structureDNA methylation

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