Author

Pedro Machado

National Hospital for Neurology and NeurosurgeryORCID 0000-0002-8411-7972Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Pedro Machado2 papers · Human Technopole

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetic & Genomic Medicine· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Organism:human· 2 Assay:proteomics· 2 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Ashirwad MerveiD· 2 shared Leonard PetrucelliiD· 2 shared Matteo ZanovelloiD· 2 shared Michael Emmerson WardiD· 2 shared Michael G. HannaiD· 2 shared Pietro FrattaiD· 2 shared Alessandro BertiniiD· 1 shared Alexander HoischeniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetic & Genomic Medicine

Ashirwad MerveORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

A 5' UTR CCG expansion in TBC1D7 causes oculopharyngodistal myopathy

Liedewei Van de Vondel, Riccardo Curró, Stefano Facchini, Isaac R. L. Xu, Jonathan De Winter, Ilaria Quartesan, Alice Monticelli, Alicia Alonso‐Jiménez, Willem De Ridder, Alessandro Bertini, Gustavo Alves, Francesca Pizzuto, Hermione Ugolini, David Pellerin, Tim De Pooter, , Andrea Cortese

The paper identifies a CCG expansion in TBC1D7 as a cause of oculopharyngodistal myopathy, showing variable repeat structure and epigenetic regulation.

medRxiv · Apr 1, 2026 · PreprintGenetic & Genomic Medicine

TDP-43 pathology induces CD8+ T cell activation through cryptic epitope recognition

Shahab Chizari, Matteo Zanovello, Steven Lingyang Kong, Vidur J. Saigal, Anna‐Leigh Brown, Valentina Turchetti, Bingxian Chen, Connor C. Devine, Luca Zampedri, Iwona Skorupinska, Giacomo Maria Minicuci, Francesca Paron, Paola Tonin, Giulia Marchetto, Ziyi Li, , Ning Jenny Jiang

This study identifies cryptic epitopes from de novo proteins caused by TDP-43 pathology as targets of CD8+ T cell activation in ALS and IBM.

bioRxiv · Jun 22, 2025 · PreprintImmunology

ProtPipe: A Multifunctional Data Analysis Pipeline for Proteomics and Peptidomics

Ziyi Li, Cory A. Weller, Syed Islamuddin Shah, Nicholas L Johnson, Ying Hao, Paige Jarreau, Jessica P. Roberts, Deyaan Guha, Colleen Bereda, Sydney Klaisner, Pedro Machado, Matteo Zanovello, Mercedes Prudencio, Björn Oskarsson, Nathan P. Staff, , Yue Andy Qi

ProtPipe is a data analysis pipeline for proteomics and peptidomics that automates processing, quality control, and downstream analysis of mass spectrometry data.

Genomics Proteomics & Bioinformatics · Nov 22, 2024Peer-reviewedBioinformatics