Author

Roberto Olivares‐Hernández

Universidad Autónoma MetropolitanaORCID 0000-0002-8431-4052Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:fungi (other)· 1

Frequent Co-Authors

Freddy Castillo-AlfonsoiD· 2 shared Gabriel Vigueras-RamíreziD· 2 shared Alexandre OliveiraiD· 1 shared Alina RenziD· 1 shared Andreas DrägeriD· 1 shared Arianna BasileiD· 1 shared Aswathy K. RaghuiD· 1 shared Bhanwar Lal PuniyaiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersGenomics

Freddy Castillo-AlfonsoORCID

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2 papers

Recent·Most cited

Gene expression analysis of carbohydrate catabolism in Leucoagaricus gongylophorus LEU18496.

Freddy Castillo-Alfonso, Gabriela Cejas-Añón, Cecilio Valadez‐Cano, Juan‐Carlos Sigala, Gabriel Vigueras-Ramírez, Roberto Olivares‐Hernández

The paper analyzes gene expression changes in Leucoagaricus gongylophorus during growth on glucose and cellulose using RNA-seq, identifying substrate-specific metabolic adaptations and regulatory mechanisms.

Molecular Omics · Feb 14, 2026Peer-reviewedGenomics

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König, Pratyay Sengupta, Dinesh Kumar Kuppa Baskaran, Tung V. N. Nguyen, Daniel Lobo, St. Elmo Wilken, Krishna Kumar Tiwari, Aswathy K. Raghu, Indumathi Palanikumar, Lavanya Raajaraam, Maziya Ibrahim, Sanjaay Balakrishnan, , Rahuman S. Malik‐Sheriff

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

bioRxiv · Sep 24, 2024 · PreprintSystems Biology