Author

Dean Everett

University of EdinburghORCID 0000-0002-8458-6779Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Anmol M KiraniD· 2 shared Jennifer CornickiD· 2 shared Lesley McGeeiD· 2 shared Maaike AlaertsiD· 2 shared Rebecca A. GladstoneiD· 2 shared Robert F. BreimaniD· 2 shared Stephen D. BentleyiD· 2 shared William Paul HanageiD· 2 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Anmol M KiranORCID

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Author profile →

3 papers

Recent·Most cited

The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci

Joshua C D'Aeth, Mark PG van der Linden, Lesley McGee, Herminia de LENCASTRE, Paul Turner, Jae-Hoon Song, Stephanie W. Lo, Rebecca A. Gladstone, Raquel Sá‐Leão, Kwan Soo Ko, William Paul Hanage, Robert F. Breiman, Bernard Beall, Stephen D. Bentley, Nicholas J. Croucher, , David William Cleary

The paper reconstructs the evolutionary histories of antibiotic-resistant pneumococcal lineages PMEN3 and PMEN9, showing how interspecies recombination contributes to antibiotic resistance and serotype switching.

eLife · Jul 14, 2021Peer-reviewedGenomics

Understanding the diversity of DNA methylation in Mycobacterium tuberculosis

Victor Ndhlovu, Anmol M Kiran, Derek James Sloan, Wilson Lewis Mandala, Marriott Nliwasa, Dean Everett, Mphatso Mwapasa, Konstantina Kontogianni, Mercy Kamdolozi, Elizabeth Lucy Corbett, Maxine Caws, Gerry Davies

The paper characterizes DNA methylation variation in 18 Mtb clinical isolates, identifies methylation-disrupting mutations, and shows lineage-specific methylation patterns.

bioRxiv · May 29, 2020 · PreprintGenomics

Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data

Chrispin Chaguza, Ellen Heinsbroek, Rebecca A. Gladstone, Terence Tafatatha, Maaike Alaerts, Chikondi Peno, Jennifer Cornick, Patrick Musicha, Naor Bar‐Zeev, Arox Wadson Kamng’ona, Aras Kadioglu, Lesley McGee, William Paul Hanage, Robert F. Breiman, Robert S. Heyderman, , Stephen D. Bentley

This paper analyzes pneumococcal carriage genomic data before and after PCV13 introduction, showing reduced vaccine-type strains and limited serotype replacement.

Clinical Infectious Diseases · May 15, 2019Peer-reviewedGenomics