Maria L. Elkjaer

NetMedGPT - A network medicine foundation model for extensive disease mechanism mining and drug repurposing

NetMedGPT is a transformer-based foundation model trained on biomedical knowledge graphs to predict drug-disease associations and support drug repurposing, outperforming specialized models in multiple tasks.

Bridging the 3D geometrical organisation of white matter pathways across anatomical length scales and species

The paper examines fibre organisation in white matter across species and anatomical scales using diffusion MRI and x-ray synchrotron imaging, finding common structural principles despite species-specific variations.

DREAMER: Exploring Common Mechanisms of Adverse Drug Reactions and Disease Phenotypes through Network-Based Analysis

DREAMER identifies molecular mechanisms of adverse drug reactions and disease phenotypes using network-based analysis, revealing key proteins and pathways involved in various conditions.

Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases

The paper introduces NEASE, a tool for functional analysis of alternative splicing events, showing its ability to identify pathways related to tissue identity and cell type development, and highlight splicing-related biomarkers.

MS Atlas - A molecular map of brain lesion stages in progressive multiple sclerosis

The paper introduces the MS Atlas, a molecular map of brain lesion stages in progressive multiple sclerosis, providing transcriptomic profiles and tools for analysis.