Antonio Fernàndez-Guerra

Environmental DNA Reveals Reykjavik's Human and Ecological History

This study uses environmental DNA from Lake Tjornin to challenge the narrative of Norse-induced environmental collapse in Reykjavik, showing dynamic human-environment interactions shaped by both cultural practices and external stressors.

CarpeDeam: A De Novo Metagenome Assembler for Heavily Damaged Ancient Datasets

CarpeDeam improves de novo assembly of ancient metagenomic datasets by incorporating damage-aware models, recovering longer sequences and proteins better than existing tools.

metaDMG - A Fast and Accurate Ancient DNA Damage Toolkit for Metagenomic Data

metaDMG estimates DNA damage in ancient metagenomic data, offering faster and more accurate results than existing methods for complex datasets.

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

The paper curates and standardizes metadata for ancient metagenomic samples to improve data retrieval and interoperability.

A computational framework for systematic exploration of biosynthetic diversity from large-scale genomic data

The paper introduces two tools, BiG-SCAPE and CORASON, for analyzing biosynthetic gene clusters in large genomic datasets, demonstrating their utility through validation and discovery of new gene cluster families.