Author

S. Katie Farney

National Institutes of HealthORCID 0000-0002-8785-8039Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:machine learning (classical)· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Assay:protein sequence· 1 Research Focus:trajectory inference· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Adam G. SowalskyiD· 1 shared Andrea R. ShiakolasiD· 1 shared Brian D. BennettiD· 1 shared Chen‐Hsiang SheniD· 1 shared Gennady Margolin· 1 shared Gwo‐Yu ChuangiD· 1 shared Halima BensmailiD· 1 shared Hanna M. Petrykowska· 1 shared

Activity by Year

2019-2025 · peak 1/yr

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10 top collaborators · 20 mutual co-author links

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1 shared paperCancer Biology

Adam G. SowalskyORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 16, 2025

Discovery and performance of DNA methylation panels for cancer detection and classification in blood

Gennady Margolin, Sara R. Bang-Christensen, Sara A. Grimm…·Laura L. Elnitski

This paper identifies DNA methylation biomarker panels for multi-cancer detection and tissue-of-origin classification using blood samples, achieving high sensitivity and low false positive rates.

DOI 10.1101/2025.09.16.676542

humanDNA methylation

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BioinformaticsScientific ReportsPeer-reviewedOct 11, 2019

Accurate Prediction of Antibody Resistance in Clinical HIV-1 Isolates

Reda Rawi, Raghvendra Mall, Chen‐Hsiang Shen…·Gwo‐Yu Chuang

The paper develops machine learning classifiers to predict HIV-1 resistance to 33 neutralizing antibodies with 96% accuracy using clinical isolates.

45 citations

humanprotein sequence

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