Samuel Martín

This study uses spatial transcriptomics to map immune responses in Atlantic salmon gills infected with AGD, revealing region-specific transcriptional domains and immune organization.

The paper generates and validates F0 CRISPR-Cas9 pax6 knockout mutants in the gastropod Crepidula fornicata without an assembled genome, showing eye-loss phenotype and confirming edits via Sanger sequencing and ICE analysis.

The paper uses genomic data to identify evolutionarily significant and vulnerable Arctic charr populations in Scotland, highlighting those most at risk from climate change.

This study examines the evolution of gig immune genes in teleosts, focusing on Atlantic salmon, revealing distinct evolutionary trajectories and regulatory mechanisms.

This study investigates how ubiquitination of host proteins changes in Atlantic salmon infected with two viruses, finding distinct ubiquitination patterns linked to immune responses.

The paper compares transcriptomic responses to ISAV infection in resistant and susceptible Atlantic salmon across three tissues at different timepoints, identifying organ-specific immune and non-immune gene expression patterns.

This study reconstructs genome-wide rediploidization after autopolyploidization in salmonids over 100 million years, showing two waves of rediploidization and lineage-specific ohnologue divergence.

This study identifies genetic and functional basis of resistance to ISAV in Atlantic salmon using GWAS and RNA sequencing, finding TRIM25 as a key antiviral gene.

This study identifies 15,483 high-confidence structural variants in 492 Atlantic salmon genomes, revealing their role in population structure, functional impact, and domestication traits.

The paper develops an optimized lentiviral CRISPR/Cas9 protocol for efficient genome editing in Chinook salmon cells, demonstrating successful gene editing and antibiotic selection.

This study investigates the role of ALKBH8 in protecting mouse lungs from naphthalene toxicity, showing increased sensitivity in its deficiency and a protective effect on lung function.

This study examines how acute and chronic stress affect the transcriptome, methylome, and immune response in Atlantic salmon, finding contrasting effects on gene expression and epigenetic regulation.

The paper introduces FAASG, an initiative to study salmonid genomes to understand phenotypic variation and improve aquaculture and conservation.

The paper proposes LORe as a model explaining delayed rediploidization and its impact on salmonid evolution, showing lineage-specific ohnologue divergence and functional adaptation.