Mehmet Fatih Yanik

Simultaneous single-cell calcium imaging of neuronal population activity and brain-wide BOLD fMRI

The paper introduces a novel MRI-compatible microscope to simultaneously record single-cell calcium activity and whole-brain BOLD fMRI in awake mice, revealing vascular-dependent neural activity patterns.

An Optimized Registration Workflow and Standard Geometric Space for Small Animal Brain Imaging

This paper introduces an optimized registration workflow and standard geometric space for small animal MRI, improving consistency and data comparability across subjects and sessions.

Electrocorticography based monitoring of anaesthetic depth in mice

This paper develops an electrocorticography-based system to monitor anaesthetic depth in mice using gradient boosting regression, achieving real-time tracking with ten-second latency.

Deep-learning based identification, tracking, pose estimation, and behavior classification of interacting primates and mice in complex environments

This paper introduces a deep learning pipeline for tracking and classifying behaviors of interacting primates and mice in complex environments using video data.

An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data

The paper presents an open-source workflow to convert small animal MRI data from ParaVision to BIDS format, improving data standardization and compatibility.

A hippocampal model for behavioral time acquisition and fast bidirectional replay of spatio-temporal memory sequences

This paper proposes a hippocampal model that stores and bidirectionally replays spatio-temporal memory sequences, using mechanisms like synfire chains, global inhibition, and cholinergic modulation.