Author

Mallery I. Breban

Yale UniversityORCID 0000-0002-8976-9988Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Organism:Arabidopsis· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Nathan D. GrubaughiD· 4 shared Chantal B. F. VogelsiD· 3 shared Afeez K. SodeindeiD· 2 shared Ellie BourgikosiD· 2 shared Isabel M. OttiD· 2 shared Nicole M. FeriancekiD· 2 shared Perran A. RossiD· 2 shared Seth N. RedmondiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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4 shared papersMicrobiology

Nathan D. GrubaughORCID

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Author profile →

5 papers

Recent·Most cited

A targeted amplicon sequencing panel for cost-effective high-throughput genotyping of Aedes aegypti

Josquin Daron, Alicia Lecuyer, Laurence Ma, Pegah Marzooghi, Mallery I. Breban, Peter Kyrylos, I’ah Donovan-Banfield, Seth N. Redmond, Louis Lambrechts

This paper presents a targeted amplicon sequencing panel for cost-effective high-throughput genotyping of Aedes aegypti, showing it can replicate WGS population structure analyses and accurately measure genetic admixture.

Parasites & Vectors · Apr 15, 2026Peer-reviewedGenomics

Evolutionary history of Jamestown Canyon virus disentangles complex multi-vector ecology

Ellie Bourgikos, Simon Dellicour, Philippe Lemey, Nicole M. Feriancek, Angela B. Bransfield, Mallery I. Breban, Michael J. Misencik, Tanya A. Petruff, John J. Shepard, Theodore G. Andreadis, John F. Anderson, Kiet A. Ngo, Joseph G. Maffei, Alan P. Dupuis, Stephen M. Rich, , Nathan D. Grubaugh

This study uses whole-genome sequencing and phylodynamic methods to analyze the evolutionary history and ecological dynamics of Jamestown Canyon virus, revealing its slow evolution and transmission patterns.

bioRxiv · Jan 10, 2026 · PreprintEcology

Heterogeneity in inhibition of genetically diverse dengue virus strains by Wolbachia

Afeez K. Sodeinde, Emilie Finch, Ke Li, Mallery I. Breban, Ellie Bourgikos, Braiya L Nolan, Nicole M. Feriancek, Isabel M. Ott, Julian W. Bakker, Verity Hill, Perran A. Ross, Xinyue Gu, Angkana T. Huang, Henrik Salje, Nathan D. Grubaugh, Chantal B. F. Vogels

This study evaluates the inhibition of genetically diverse dengue virus strains by two Wolbachia strains, finding differential effectiveness and implications for control strategies.

bioRxiv · Sep 18, 2025 · PreprintMicrobiology

Implications of successive blood feeding on Wolbachia-mediated dengue virus inhibition in Aedes aegypti mosquitoes

Rebecca M. Johnson, Mallery I. Breban, Braiya L. Nolan, Afeez K. Sodeinde, Isabel M. Ott, Perran A. Ross, Xinyue Gu, Nathan D. Grubaugh, T. Alex Perkins, Doug E. Brackney, Chantal B. F. Vogels

This study examines how successive blood feeding affects DENV-2 dissemination and survival in Ae. aegypti mosquitoes with and without Wolbachia, finding that Wolbachia strongly inhibits virus transmission despite frequent feeding.

Nature Communications · Jul 29, 2025Peer-reviewedMicrobiology

Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens

Chaney C. Kalinich, Freddy L. Gonzalez, Alice Osmaston, Mallery I. Breban, Isabel Distefano, Candy Leon, Patricia Sheen, Mirko Zimic, Jorge Coronel, Grace Tan, Valeriu Crudu, Nelly Ciobanu, Alexandru Codreanu, Walter Solano, Jimena Ráez, , Seth N. Redmond

This paper develops tiled amplicon sequencing panels for whole-genome sequencing of pathogenic bacteria without culturing, enabling drug resistance classification from clinical samples.

bioRxiv · Dec 19, 2024 · PreprintGenomics