Author

Dominic Fitzgerald

University of ChicagoORCID 0000-0002-9045-4043Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Approach:statistical model· 3 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Kevin P. WhiteiD· 3 shared Donghoon LeeiD· 2 shared Jason J. LiuiD· 2 shared Jennifer R. MoraniD· 2 shared Jing ZhangiD· 2 shared Lijia MaiD· 2 shared Mark GersteiniD· 2 shared Abayomi OdetundeiD· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersGenomics

Kevin P. WhiteORCID

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Author profile →

3 papers

Recent·Most cited

Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes

Naser Ansari‐Pour, Yonglan Zheng, Toshio F. Yoshimatsu, Ayodele Sanni, Mustapha Ajani, Jean-Baptiste Reynier, Avraam Tapinos, Jason J. Pitt, Stefan C. Dentro, Anna Woodard, Padma Sheila Rajagopal, Dominic Fitzgerald, Andreas J Gruber, Abayomi Odetunde, Abiodun Olaniyi Popoola, , Olufunmilayo Ibironke Olopade

The paper analyzes whole-genome data from Nigerian breast cancer patients, identifying ethnic-driven somatic evolution and distinct genomic subtypes associated with African ancestry.

Nature Communications · Nov 26, 2021Peer-reviewedGenomics

STARRPeaker: Uniform processing and accurate identification of STARR-seq active regions

Donghoon Lee, Manman Shi, Jennifer R. Moran, Martha Wall, Jing Zhang, Jason J. Liu, Dominic Fitzgerald, Yasuhiro Kyono, Lijia Ma, Kevin P. White, Mark Gerstein

The paper introduces STARRPeaker, a processing pipeline for STARR-seq data that improves enhancer detection by addressing sequencing biases and RNA stability effects.

Genome biology · Dec 1, 2020Peer-reviewedBioinformatics

An integrative ENCODE resource for cancer genomics

Jing Zhang, Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray, Hongbo Yang, Jason J. Liu, William U. Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, , Mark Gerstein

The paper develops a custom ENCODE annotation for cancer genomics, highlighting TF-RBP interactions and network rewiring during oncogenesis, and validates findings using experimental assays.

Nature Communications · Jul 29, 2020Peer-reviewedGenomics