Author

Marwan Zouinkhi

Howard Hughes Medical InstituteORCID 0000-0002-9441-2908Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:spatial transcriptomics· 2 Organism:C. elegans· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Ella BahryiD· 2 shared Klim Kolyvanov· 2 shared Laura BreimanniD· 2 shared Stephan PreibischiD· 2 shared Benjamin R. KingiD· 1 shared Kyle HarringtoniD· 1 shared Lena Annika StreetiD· 1 shared Leo Epstein· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersDevelopmental Biology

Ella BahryORCID

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2 papers

Recent·Most cited

Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos

Laura Breimann, Ella Bahry, Marwan Zouinkhi, Klim Kolyvanov, Lena Annika Street, Stephan Preibisch, Sevinç Ercan

The paper develops a smFISH method with computational staging to study transcription dynamics in C. elegans embryos and finds that the DCC reduces dpy-23 transcription frequency.

bioRxiv · May 15, 2024 · PreprintDevelopmental Biology

RS-FISH: Precise, interactive, fast, and scalable FISH spot detection

Ella Bahry, Laura Breimann, Marwan Zouinkhi, Leo Epstein, Klim Kolyvanov, Nicholas Mamrak, Benjamin R. King, Xi Long, Kyle Harrington, Timothée Lionnet, Stephan Preibisch

RS-FISH detects FISH spots accurately and efficiently in 2D and 3D images, supporting applications like smFISH and spatial genomics.

Nature Methods · Nov 17, 2022Peer-reviewedBioinformatics