Dimitrios J. Stravopodis

ArthroVerse: mapping protein family diversity across arthropod-associated microbiomes

ArthroVerse compiles and annotates protein families from arthropod-associated microbiomes to explore functional diversity and host-microbe interactions.

A UNIQUOME BASED METHOD FOR THE PROTEIN IDENTIFICATION BY MASS SPECTROMETRY

This paper introduces UB-PIM, a method for protein identification by mass spectrometry using Core Unique Peptides (CrUPs) to improve specificity and reduce ambiguity in peptide-to-protein mapping.

metagRoot: A comprehensive database of protein families associated with plant root microbiomes

metagRoot provides a database of 71,091 enriched protein families from plant root microbiomes, annotated with structural and functional information to aid in microbiome research.

Uniquome: Construction and Decoding of a Novel Proteomic Atlas that Contains New Peptide Entities

The paper constructs and decodes the Uniquome by introducing new peptide entities that aid in protein identification and functional analysis across species.

ARID1A-induced transcriptional reprogramming rewires signalling responses to drug treatment in melanoma

This study reveals how ARID1A-mediated transcriptional rewiring drives resistance to MAPK inhibitors in melanoma by altering signalling pathways, immune interactions, and receptor dynamics, highlighting potential targets for combinatorial therapies.

FLAME: a web tool for functional and literature enrichment analysis of multiple gene lists

FLAME is a web tool that enables the analysis of multiple gene lists through functional and literature enrichment, offering interactive visualizations and support for 197 organisms.