Author

Kerem Uzel

University of ZurichORCID 0000-0002-9602-356XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:mouse· 3 Approach:statistical model· 3 Assay:ATAC-seq· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:batch correction / integration· 1

Frequent Co-Authors

Isabelle M. MansuyiD· 3 shared Rodrigo G. Arzate‐MejíaiD· 3 shared Irina Lazar-ContesiD· 2 shared Leonard C. StegiD· 2 shared Christine GrosseniD· 1 shared Deepak K. TanwariD· 1 shared F. Gözde ÇilingiriD· 1 shared Inés Blanc Giro· 1 shared

Activity by Year

2020-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersMolecular Biology

Isabelle M. MansuyORCID

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Author profile →

4 papers

Recent·Most cited

Paternal diet shapes paternal and maternal transcriptomes in the early embryo through parallel sperm-associated mechanisms

Leonard C. Steg, Inés Blanc Giro, Kerem Uzel, Rodrigo G. Arzate‐Mejía, Isabelle M. Mansuy

The paper shows that paternal diet affects both paternal and maternal transcriptomes in early embryos through distinct sperm-related mechanisms.

bioRxiv · Sep 24, 2026 · PreprintMolecular Biology

Early life stress affects the transcription and chromatin accessibility of spermatogonial cells

Rodrigo G. Arzate‐Mejía, Theresa Schöpp, Kerem Uzel, Irina Lazar-Contes, Isabelle M. Mansuy

This study shows early-life stress alters the transcriptome and chromatin accessibility of mouse spermatogonial cells, with molecular signatures persisting into adulthood.

bioRxiv · Aug 25, 2026 · PreprintGenomics

lcUMAPtSNE: Use of non-linear dimensionality reduction techniques with genotype likelihoods

Kerem Uzel, Christine Grossen, F. Gözde Çilingir

The paper develops a workflow using UMAP and t-SNE on genotype likelihoods from low-coverage sequencing to analyze population structure in scimitar-horned oryx.

BMC Genomics · May 19, 2026Peer-reviewedBioinformatics

Dynamics of transcriptional programs and chromatin accessibility in mouse spermatogonial cells from early postnatal to adult life

Irina Lazar-Contes, Rodrigo G. Arzate‐Mejía, Deepak K. Tanwar, Leonard C. Steg, Kerem Uzel, Olivier Ulrich Feudjio, Marion Crespo, Pierre‐Luc Germain, Isabelle M. Mansuy

The paper examines chromatin remodeling and gene expression dynamics in mouse spermatogonial cells across postnatal development using RNA-seq and ATAC-seq.

bioRxiv · Aug 20, 2020Developmental Biology