Author

Reed Pifer

The University of Texas Health Science Center at HoustonORCID 0000-0002-9648-450XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

David E. GreenbergiD· 2 shared Jiwoong KimiD· 2 shared Samuel A. ShelburneiD· 2 shared Andrew Young KohiD· 1 shared Awdhesh KaliaiD· 1 shared Blake HansoniD· 1 shared César A. AriasiD· 1 shared Guanghua XiaoiD· 1 shared

Activity by Year

2020-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersGenomics

David E. GreenbergORCID

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2 papers

Recent·Most cited

GenomicsJournal of Antimicrobial ChemotherapyPeer-reviewedOct 8, 2020

Concurrence of Porin Loss and Modular Amplification of β-Lactamase Encoding Genes Drives Carbapenem Resistance in a Cohort of Recurrent Enterobacterales Bacteremia

William C. Shropshire, Samuel L Aitken, Reed Pifer…·Samuel A. Shelburne

This study identifies non-carbapenemase-producing CRE mechanisms in recurrent Enterobacterales infections driven by porin loss and β-lactamase gene amplification.

59 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedJan 13, 2020

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

Jiwoong Kim, David E. Greenberg, Reed Pifer…·Xiaowei Zhan

VAMPr predicts antibiotic resistance using genomic data by analyzing variant associations and building machine learning models.

86 citationstop 4%

bacteria (other)whole-genome sequencing

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