Awdhesh Kalia

This paper evaluates the reproducibility and accuracy of nanopore-only versus hybrid-assembly methylation calling in bacterial genomes, showing high concordance and precision.

The paper assesses how ESBL-positive ST131 E. coli adapts to carbapenem exposure, finding increased ESBL gene copy numbers and Omp gene mutations correlate with resistance development.

This study identifies non-carbapenemase-producing CRE mechanisms in recurrent Enterobacterales infections driven by porin loss and β-lactamase gene amplification.

The paper identifies Drosha-dependent microRNAs that regulate oocyte development both autonomously and non-autonomously in C. elegans.

The paper identifies a chimeric M4 protein and a novel Emm pattern in emm4 GAS strains due to an emm/enn gene fusion, which replaced pattern E strains in Houston over four years.