Mathieu Rouard

SaVanache provides a visualization tool for exploring pangenome variation graphs, enabling interactive analysis of genetic diversity and structural variations.

This paper reconstructs the ancestral Musaceae karyotype and links chromosome evolution to bract coloration diversity through genomic and transcriptomic analyses.

This paper compiles a genomic diversity catalogue of cultivated bananas using in silico chromosome painting, revealing intra-cultivar group variability and new genomic patterns.

This study constructs the first pan-genome of Theobroma cacao using 216 accessions, revealing 30,489 pan-genes and identifying gene loss and domestication impacts on Criollo genetic group.

The paper uses phylogenetic analyses to classify GDSL-type esterase/lipase genes into orthogroups across angiosperm species, revealing expansion and conservation patterns.

Panache provides a web-based tool for visualizing linear pangenomes with presence-absence variations and additional tracks.

This study investigates intergenomic recombination in ABB allotriploid bananas using SNP markers from RAD-Seq data, revealing recurrent homoeologous exchanges and proposing new hypotheses about their origin and diversity.