The paper describes the Neuroscience Multi-Omic Archive, a repository for single-cell transcriptomic and epigenomic data from mammalian brains, providing tools for data access and analysis.

Nucleic Acids Research · Nov 1, 2022Peer-reviewedGenomics

Making Common Fund data more Findable: Catalyzing a Data Ecosystem

Amanda L. Charbonneau, Arthur Brady, Karl Czajkowski, Jain Aluvathingal, Saranya Canchi, Robert Carter, Kyle Chard, Daniel J. B. Clarke, Jonathan Crabtree, Heather H. Creasy, Mike D’Arcy, Victor Felix, Michelle Gwinn Giglio, Alicia A. Gingrich, Rayna M Harris, , Owen R. White

The paper describes the development of a metadata federation system for NIH Common Fund data to improve discoverability without data movement.

GigaScience · Jan 1, 2022Peer-reviewedBioinformatics

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge, Seth A. Ament, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bézieux, Tommaso Biancalani, A. Sina Booeshaghi, Héctor Corrada Bravo, , Eran A. Mukamel

The paper creates a comprehensive atlas of mouse primary motor cortex cell types using integrated transcriptomic and epigenomic data from over 600,000 samples.

Nature · Oct 6, 2021Peer-reviewedNeuroscience

Metaviz: interactive statistical and visual analysis of metagenomic data

Justin Wagner, Florin Chelaru, Jayaram Kancherla, Joseph Nathaniel Paulson, Alexander Zhang, Victor Felix, Anup Mahurkar, Niklas Elmqvist, Héctor Corrada Bravo

Metaviz provides an interactive web tool for exploring and visualizing metagenomic data through heatmaps, bar plots, and PCA scatter plots.

Nucleic Acids Research · Feb 15, 2018Peer-reviewedBioinformatics