Farzaneh Khajouei

The Neuroscience Multi-Omic Archive: A BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

The paper describes the Neuroscience Multi-Omic Archive, a repository for single-cell transcriptomic and epigenomic data from mammalian brains, providing tools for data access and analysis.

The BRAIN Initiative Cell Census Data Ecosystem: A User's Guide

The paper provides a guide to the BRAIN Initiative Cell Census Network (BICCN) data ecosystem, its tools, and resources for analyzing brain cell types across species.

Model-based analysis of polymorphisms in an enhancer reveals cis-regulatory mechanisms

The paper uses sequence-to-expression modeling to predict the impact of SNPs in an enhancer and validates mechanistic models with experimental data.

An information theoretic treatment of sequence-to-expression modeling

The paper introduces an information-theoretic framework to evaluate and design gene regulation experiments by quantifying information gain from perturbation experiments on D. melanogaster genes.