Anna Heintz‐Buschart

Supervised restricted data fusion with common, local & distinct components

PESCAR improves detection of subtle response-related patterns in multi-omics data by integrating response information into multiblock decomposition.

The induction of systemic resistance to barley powdery mildew by rhizosphere bacterial communities does not disrupt the structure or function of native microbial communities

This study shows that synthetic microbial communities induce systemic resistance in barley against powdery mildew without disrupting native microbial communities.

ACMTF-R: supervised multi-omics data integration uncovering shared and distinct outcome-associated variation

ACMTF-R integrates multi-omics data to identify shared and distinct outcome-associated variation, outperforming existing methods in simulated and real-world datasets.

Integrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson's disease

The paper uses integrated multi-omics to identify functional gut microbiome alterations in Parkinson's disease and prodromal stages, finding changes in metabolites and microbial gene transcripts.

Pseudomonas intra-genus competition determines protective function of SynComs in Arabidopsis thaliana

The study shows that intra-genus competition among Pseudomonas strains in synthetic communities determines their protective effect against a pathogenic isolate in Arabidopsis thaliana.

parafac4microbiome: Exploratory analysis of longitudinal microbiome data using Parallel Factor Analysis

This paper introduces PARAFAC for analyzing longitudinal microbiome data, demonstrating its effectiveness in identifying temporal patterns across three studies.

Plant diversity shapes plant volatile emission differently at the species and community level

The paper examines how plant diversity affects volatile organic compound (VOC) emissions at species and community levels using experimental plant communities.

MASCARA: coexpression analysis in data from designed experiments

MASCARA improves coexpression analysis in designed experiments by removing experimental variance to detect pathway-related coexpression patterns.

Plant species richness and the root economics space drive soil fungal communities

The paper shows that plant species richness and root economics space axes influence soil fungal community composition in a grassland experiment.

Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis

This study uses PARAFAC to analyze oral microbiome and metabolome dynamics during experimental gingivitis, identifying microbial subcommunities and metabolic pathways linked to inflammation.

Bioenergetic mapping of 'healthy microbiomes' via compound processing potential imprinted in gut and soil metagenomes

The paper quantifies the compound processing potential of gut and soil metagenomes to link microbiome function to human health and ecosystem quality.

Common soil history is more important than plant history for arbuscular mycorrhizal community assembly in an experimental grassland diversity gradient

The study shows that soil history has a greater impact than plant history on arbuscular mycorrhizal fungal community assembly in a grassland diversity experiment.

binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets

binny is an automated binning tool that produces high-quality MAGs from metagenomic data, outperforming existing methods in recovering complete and pure genomes.

Isolation of nucleic acids from low biomass samples: detection and removal of sRNA contaminants

The paper identifies and removes small RNA contaminants from microRNA extraction kits, showing their presence in human plasma samples and published datasets.