Stéphane Hacquard

This study identifies genetic markers and microbial diversity changes in lettuce that influence its response to phosphate-deficient soil inoculum.

This study links fungal community composition to plant phenotype under moderate warming by showing fungal variation better predicts phenotypic responses than host-microbiome origin matching.

The paper shows bacteria suppress fungal antimicrobial gene expression in soil microbiota, reducing fungal colonization and revealing community-level microbial competition.

The paper shows that the antimicrobial effector Ave1 from Verticillium dahliae affects tomato microbiota assembly and virulence across different soils.

The paper examines how plant phenotypic traits influence lettuce leaf microbiota diversity, finding morphology has a greater impact than genetic variation or nutrient content.

The paper identifies a fungal gene encoding a β-1,3-glucanase as a key genetic factor driving multi-host infection in Plectosphaerella cucumerina.

The study shows that intra-genus competition among Pseudomonas strains in synthetic communities determines their protective effect against a pathogenic isolate in Arabidopsis thaliana.

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

Rbec is a tool for analyzing amplicon sequencing data from synthetic microbial communities, correcting errors and detecting polymorphisms and contaminants.