Author

Ilinca M. Lungu

Ontario Institute for Cancer ResearchORCID 0000-0002-9996-5771Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 4 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Gun-Ho JangiD· 3 shared Julie M. WilsoniD· 3 shared Steve GallingeriD· 3 shared Amy Xin Wei ZhangiD· 2 shared Ayelet BorgidaiD· 2 shared Benjamin Haibe‐KainsiD· 2 shared John M.S. BartlettiD· 2 shared Robert Edward DenrocheiD· 2 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersCancer Biology

Gun-Ho JangORCID

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4 papers

Recent·Most cited

Extra-lineage tissue programs define the transcription states of human pancreatic cancer

Sabrina Ge, Paul Tonon, Jingxiong Xu, Gun-Ho Jang, Ferris Nowlan, Jimin Min, Karen Ng, Eugenia Flores Figueroa, Amy Xin Wei Zhang, Michelle Chan‐Seng‐Yue, Yuanchang Fang, Adriana Migliorini, Julie M. Wilson, Anna Dodd, Sebastian Arcila-Barrera, , Faiyaz Notta

The paper identifies four epithelial transcription states in pancreatic cancer and links their origins to early developmental processes.

bioRxiv · May 4, 2026 · PreprintCancer Biology

Epigenomic landscape of the developing human rhombic lip reveals gene regulatory network and non-coding loci of developmental, evolutionary, and disease relevance

Xinghan Sun, Soumya Menon, Paul Wambo, Ilinca M. Lungu, Kimberly A. Aldinger, Shraddha Pai

The paper identifies a gene regulatory network and non-coding loci in the human rhombic lip using epigenomic data, linking them to developmental, evolutionary, and disease processes.

bioRxiv · Oct 30, 2025 · PreprintDevelopmental Biology

Meta-analysis of 1,200 transcriptomic profiles identifies a prognostic model for pancreatic ductal adenocarcinoma

Vandana Sandhu, Knut Jørgen Labori, Ayelet Borgida, Ilinca M. Lungu, John M.S. Bartlett, Sara Hafezi‐Bakhtiari, Robert Edward Denroche, Gun Ho Jang, Danielle Pasternack, Faridah Mbabaali, Matthew Watson, Julie M. Wilson, Elin Hegland Kure, Steve Gallinger, Benjamin Haibe‐Kains

The paper develops a prognostic model for pancreatic ductal adenocarcinoma using meta-analysis of transcriptomic data, identifying gene pairs associated with early mortality after surgery.

JCO Clinical Cancer Informatics · May 9, 2019Peer-reviewedGenomics

Whole Genomes Define Concordance of Matched Primary, Xenograft, and Organoid Models of Pancreas Cancer

Deena M.A. Gendoo, Robert Edward Denroche, Amy Xin Wei Zhang, Nikolina Radulovich, Gun Ho Jang, Mathieu Lemire, Sandra Elisabeth Fischer, Dianne E. Chadwick, Ilinca M. Lungu, Emin Ibrahimov, Ping‐Jiang Cao, Lincoln David Stein, Julie M. Wilson, John M.S. Bartlett, Ming‐Sound Tsao, , Benjamin Haibe‐Kains

The paper compares whole-genome data from primary pancreatic cancer, xenografts, and organoids to assess genetic concordance across different models.

PLoS Computational Biology · Jan 10, 2019Peer-reviewedBioinformatics