Author

Ke Qin Gong

University of Southern CaliforniaORCID 0000-0003-0337-297XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:Hi-C· 4 Approach:statistical model· 4 Research Focus:gene regulatory network inference· 2 Approach:simulation· 2 Research Focus:spatial domain detection· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Frank AlberiD· 4 shared Xianghong Jasmine ZhouiD· 3 shared Harianto TjongiD· 2 shared Nan Hua· 2 shared Aslı YıldırımiD· 1 shared Cornelis MurreiD· 1 shared Guido PollesiD· 1 shared Hanjun Shin· 1 shared

Activity by Year

2017-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersBioinformatics

Frank AlberORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintJul 11, 2021

Population-based structure modeling reveals key roles of nuclear microenvironment in gene functions

Aslı Yıldırım, Nan Hua, Lorenzo Boninsegna…·Frank Alber

The paper uses population-based modeling of Hi-C data to analyze the nuclear microenvironment's role in gene function, revealing structural variability and functional heterogeneity.

6 citations

Hi-Cstatistical model

𝕏 PostBluesky

BioinformaticsNature ProtocolsPeer-reviewedApr 5, 2018

PGS: a dynamic and automated population-based genome structure software

Nan Hua, Harianto Tjong, Hanjun Shin…·Frank Alber

PGS generates a population of 3D genome structures from Hi-C data to better understand genome organization and provides analysis tools.

71 citationstop 5%

Hi-Cstatistical model

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedJul 31, 2017

The 3D genome organization of Drosophila melanogaster through data integration

Qingjiao Li, Harianto Tjong, Xiao Li…·Frank Alber

This paper integrates Hi-C and lamina-DamID data to compute 3D genome structures for Drosophila melanogaster, revealing structural features and functional insights.

104 citationstop 3%

DrosophilaHi-C

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Molecular BiologybioRxivJan 15, 2017

Comprehensive characterization of neutrophil genome topology

Yina Zhu, Ke Qin Gong, Matthew Denholtz…·Cornelis Murre

This study characterizes the genome topology of neutrophils, revealing super-contraction and chromatin reorganization during differentiation.

77 citations

humanDNA methylation

𝕏 PostBluesky